The Open Applied Informatics Journal

2007, 1 : 1-10
Published online 2007 June 5. DOI: 10.2174/1874136300701010001
Publisher ID: TOAINFOJ-1-1

Bioinformatics Study of Functional Associations Observed in Multiple Sources of Human Genome Data

Seungwoo Hwang and Igor B. Kuznetsov
Gen*NY*sis Center for Excellence in Cancer Genomics, Department of Epidemiology and Biostatistics, University at Albany, SUNY, One Discovery Drive, Rensselaer, NY 12144, USA.

ABSTRACT

High-throughput genome analysis techniques produce the ever increasing number of heterogeneous large-scale datasets. Studies of these mutually complementary sources of data promise insights into a global picture of the living cell. Here, we present a simple bioinformatics methodology for the analysis of multiple heterogeneous sources of ‘omic’ (genomic, proteomic, etc) data. We apply this methodology to study associations among four types of human ‘omic’ data: protein-protein interactions, gene expression, transcription factor binding sites, and functional pathways. The results of our study indicate that the proposed approach can be used to identify and rank statistically significant functional associations among genes. We show that combinations of multiple data types provide additional insights into the properties of functional pathways. The proposed methodology can also be used as a quantitative procedure for evaluating the quality of ‘omic’ datasets.